rif.apps package

Submodules

rif.apps.cyclic_cyclic_dock module

rif.apps.fiber_dock module

a prototype module for fiber docking. for illustration see:

https://docs.google.com/presentation/d/1qv6yZIy0b2dfmZAzA7bFNJD4pl9h7Nt1mOL4aqiVpOw/pub?start=false&loop=false&delayms=3000#slide=id.g1d6846b840_0_8

(see prev slide for simpler, less-general case)

rif.apps.fiber_dock.center_welzl(model)[source]

center model based on welzl optimal bounding sphere, report radius

rif.apps.fiber_dock.fiber_dock(pdb_file)[source]

turn monomer into helical fiber in “all” possible ways

rif.apps.fiber_dock.rel_prime_flat_tri(Nmax)[source]

return two same-size lists of relatively prime numbers

mapped to tuples, would be: 1,2 1,3 2,3 1,4 3,4 1,5 2,5 3,5 4,5 … replace with numpy one-liner, probably more clear

rif.apps.numpy_experiments module

Module contents

docstring for rif.apps