rif.rcl package

Submodules

rif.rcl.conversions module

rif.rcl.conversions.atoms(pose, sele='HEAVY', **kwargs)

extract rif style atoms from rosetta pose

rif.rcl.conversions.bbstubs(pose, which_resi=None)

extract rif style stubs from rosetta pose

rif.rcl.conversions.rays(pose, sele, shifts=None, protein_only=True, **kwargs)

extract rif style rays from rosetta pose

rif.rcl.conversions_test module

rif.rcl.pyrosetta_util module

nRosetta Compatibility Layer

if pyrosetta is available, provides pyrosetta. check value of HAVE_PYROSETTA.

exception rif.rcl.pyrosetta_util.AlreadyInitError

Rosetta already initialized but should not be

exception rif.rcl.pyrosetta_util.Error

Rosetta Compatibility Exception

exception rif.rcl.pyrosetta_util.ReInitError

Tried to reinitialize rosetta with different options

exception rif.rcl.pyrosetta_util.RosettaDBError

Rosetta Database Error

rif.rcl.pyrosetta_util.add_files_to_rosettaDB(fname, contents)

returns true if update was done

rif.rcl.pyrosetta_util.add_residue_types_to_rosettaDB(newfiles, comment='## RIF added restypes', typeset='fa_standard')

return true if update was done

rif.rcl.pyrosetta_util.concatenate_pose(p, to_append, lb=1, ub=-1, out=None)

put poses together aligning on end of p

rif.rcl.pyrosetta_util_test module

Module contents