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A
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B
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C
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D
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E
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F
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L
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M
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N
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P
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R
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S
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T
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V
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X
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_rif._index (module)
_rif._index._stripe_index (module)
A
add_files_to_rosettaDB() (in module rif.rcl.pyrosetta_util)
add_residue_types_to_rosettaDB() (in module rif.rcl.pyrosetta_util)
align_skew_line_pairs() (in module rif.legacy.xyzMath)
alignaroundaxis() (in module rif.legacy.xyzMath)
alignvector() (in module rif.legacy.xyzMath)
alignvectors() (in module rif.legacy.xyzMath)
alignvectors_minangle() (in module rif.legacy.xyzMath)
AlreadyInitError
atoms() (in module rif.rcl.conversions)
B
bbstubs() (in module rif.rcl.conversions)
C
center_welzl() (in module rif.apps.fiber_dock)
concatenate_pose() (in module rif.rcl.pyrosetta_util)
coplanar() (in module rif.legacy.xyzMath)
D
dihedral() (in module rif.legacy.xyzMath)
E
Error
expand_xforms() (in module rif.legacy.xyzMath)
F
fiber_dock() (in module rif.apps.fiber_dock)
find_identities() (in module rif.legacy.xyzMath)
G
get_cell_bounds_orthogonal_only() (in module rif.legacy.xyzMath)
get_rotamer_index() (in module rif.rotamer.richardson)
get_rotamer_space (in module rif.rotamer.richardson)
global_rif_operators_disable() (in module rif.dtypes)
global_rif_operators_enable() (in module rif.dtypes)
L
line_line_closest_points() (in module rif.legacy.xyzMath)
line_line_distance() (in module rif.legacy.xyzMath)
line_plane_intersection() (in module rif.legacy.xyzMath)
M
make_huge_array() (in module _rif._index._stripe_index)
Mat (class in rif.legacy.xyzMath)
N
neighbor_count() (_rif._index._stripe_index.stripe_index_3d_Atom method)
(_rif._index._stripe_index.stripe_index_3d_Atom_object method)
(_rif._index._stripe_index.stripe_index_3d_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_Atom method)
(_rif._index._stripe_index.stripe_index_3d_V3_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_object method)
neighbor_count_brute() (_rif._index._stripe_index.stripe_index_3d_Atom method)
(_rif._index._stripe_index.stripe_index_3d_Atom_object method)
(_rif._index._stripe_index.stripe_index_3d_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_Atom method)
(_rif._index._stripe_index.stripe_index_3d_V3_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_object method)
neighbor_exists() (_rif._index._stripe_index.stripe_index_3d_Atom method)
(_rif._index._stripe_index.stripe_index_3d_Atom_object method)
(_rif._index._stripe_index.stripe_index_3d_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_Atom method)
(_rif._index._stripe_index.stripe_index_3d_V3_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_object method)
neighbor_exists_brute() (_rif._index._stripe_index.stripe_index_3d_Atom method)
(_rif._index._stripe_index.stripe_index_3d_Atom_object method)
(_rif._index._stripe_index.stripe_index_3d_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_Atom method)
(_rif._index._stripe_index.stripe_index_3d_V3_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_object method)
neighbors() (_rif._index._stripe_index.stripe_index_3d_Atom method)
(_rif._index._stripe_index.stripe_index_3d_Atom_object method)
(_rif._index._stripe_index.stripe_index_3d_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_Atom method)
(_rif._index._stripe_index.stripe_index_3d_V3_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_object method)
neighbors_brute() (_rif._index._stripe_index.stripe_index_3d_Atom method)
(_rif._index._stripe_index.stripe_index_3d_Atom_object method)
(_rif._index._stripe_index.stripe_index_3d_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_Atom method)
(_rif._index._stripe_index.stripe_index_3d_V3_V3 method)
(_rif._index._stripe_index.stripe_index_3d_V3_object method)
P
point_line_distance() (in module rif.legacy.xyzMath)
proj() (in module rif.legacy.xyzMath)
projperp() (in module rif.legacy.xyzMath)
R
randnorm() (in module rif.legacy.xyzMath)
ray_sphere_intersection() (in module rif.legacy.xyzMath)
rays() (in module rif.rcl.conversions)
ReInitError
rel_prime_flat_tri() (in module rif.apps.fiber_dock)
rif (module)
rif.apps (module)
rif.apps.cyclic_cyclic_dock (module)
rif.apps.examples (module)
rif.apps.examples.170430_david_patch (module)
rif.apps.examples.db_helix_asp (module)
rif.apps.examples.db_stub_index (module)
rif.apps.examples.db_stub_index_test (module)
rif.apps.examples.geom_examples (module)
rif.apps.examples.glumpy_ex (module)
rif.apps.fiber_dock (module)
rif.apps.numpy_experiments (module)
rif.dtypes (module)
rif.geom (module)
rif.geom.rand_geom (module)
rif.geom.rand_geom_test (module)
rif.geom.Ray (module)
rif.geom.ray_hash (module)
rif.geom.ray_hash_error_test (module)
rif.geom.ray_hash_test (module)
rif.geom.Ray_test (module)
rif.hash (module)
rif.index (module)
rif.legacy (module)
rif.legacy.xyzMath (module)
rif.legacy.xyzMath_test (module)
rif.numeric (module)
rif.numeric.jagged (module)
rif.numeric.jagged_test (module)
rif.numeric.lattice (module)
rif.numeric.lattice_test (module)
rif.rcl (module)
rif.rcl.conversions (module)
rif.rcl.conversions_test (module)
rif.rcl.pyrosetta_util (module)
rif.rcl.pyrosetta_util_test (module)
rif.rotamer (module)
rif.rotamer.richardson (module)
rif.rotamer.richardson_test (module)
rif.sampling (module)
rif.sampling.orientations (module)
rif.sampling.orientations_test (module)
rif.sele (module)
rif.sele.sele (module)
rif.sele.sele_test (module)
RifOperators (class in rif.dtypes)
RifOperatorsDisabled (class in rif.dtypes)
rmsd() (in module rif.legacy.xyzMath)
RosettaDBError
rotation_around() (in module rif.legacy.xyzMath)
rotation_around_dof_to_set_vec_vec_angle() (in module rif.legacy.xyzMath)
rotation_axis() (rif.legacy.xyzMath.Mat method)
rotation_matrix_degrees() (in module rif.legacy.xyzMath)
S
sample_rotamer_space() (in module rif.rotamer.richardson)
skew_lines_center() (in module rif.legacy.xyzMath)
slide_to_make_lines_intersect() (in module rif.legacy.xyzMath)
stripe_index_3d() (in module rif.index)
stripe_index_3d_Atom (class in _rif._index._stripe_index)
stripe_index_3d_Atom_object (class in _rif._index._stripe_index)
stripe_index_3d_V3 (class in _rif._index._stripe_index)
stripe_index_3d_V3_Atom (class in _rif._index._stripe_index)
stripe_index_3d_V3_object (class in _rif._index._stripe_index)
stripe_index_3d_V3_V3 (class in _rif._index._stripe_index)
symmetrize_xform() (in module rif.legacy.xyzMath)
T
translation (_rif._index._stripe_index.stripe_index_3d_Atom attribute)
(_rif._index._stripe_index.stripe_index_3d_Atom_object attribute)
(_rif._index._stripe_index.stripe_index_3d_V3 attribute)
(_rif._index._stripe_index.stripe_index_3d_V3_Atom attribute)
(_rif._index._stripe_index.stripe_index_3d_V3_V3 attribute)
(_rif._index._stripe_index.stripe_index_3d_V3_object attribute)
V
Vec (class in rif.legacy.xyzMath)
X
Xform (class in rif.legacy.xyzMath)
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